Installation script for Z800 - Revision history

Lartigue at 01:42, 5 December 2015

2015-12-05T01:42:47Z

Lartigue at 14:34, 26 October 2015

2015-10-26T14:34:08Z

Lartigue at 14:52, 25 October 2015

2015-10-25T14:52:34Z

Lartigue at 21:32, 24 October 2015

2015-10-24T21:32:18Z

Lartigue at 21:27, 24 October 2015

2015-10-24T21:27:51Z

Lartigue at 22:29, 17 November 2014

2014-11-17T22:29:03Z

Lartigue at 22:19, 17 November 2014

2014-11-17T22:19:04Z

Lartigue at 13:57, 20 October 2014

2014-10-20T13:57:47Z

Lartigue at 13:50, 20 October 2014

2014-10-20T13:50:48Z

Lartigue at 22:37, 1 October 2014

2014-10-01T22:37:33Z

@@ Line 1: / Line 1: @@
 Install [https://software.intel.com/fr-fr/non-commercial-software-development Intel Parallel Studio]
 Makefile_extlib:
@@ Line 56: / Line 9: @@
   OPENMPI_NAME = openmpi
-  OPENMPI_VERSION = 1.10.0
+  OPENMPI_VERSION = 1.10.1
   OPENMPI_MAJOR_VERSION = 1.10
   OPENMPI_LOCATION = http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads
@@ Line 75: / Line 28: @@
   HDF5_NAME = hdf5
-  HDF5_VERSION = 1.8.15-patch1
+  HDF5_VERSION = 1.8.16
   HDF5_LOCATION = http://www.hdfgroup.org/ftp/HDF5/current/src
   HDF5_FILE = $(HDF5_NAME)-$(HDF5_VERSION).tar.bz2
@@ Line 93: / Line 46: @@
   LAPACK_NAME = lapack
-  LAPACK_VERSION = 3.5.0
+  LAPACK_VERSION = 3.6.0
   LAPACK_LOCATION = http://www.netlib.org/lapack
   LAPACK_FILE = $(LAPACK_NAME)-$(LAPACK_VERSION).tgz
@@ Line 99: / Line 52: @@
   MMG3D4_NAME = mmg3d4
-  MMG3D4_VERSION = 4.0.2
+  MMG3D4_VERSION = 4.0.3
   MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34531
   MMG3D4_FILE = $(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source.tar.gz
@@ Line 111: / Line 64: @@
   PETSC_NAME = petsc
-  PETSC_VERSION = 3.6.2
+  PETSC_VERSION = 3.6.3
   PETSC_LOCATION = http://ftp.mcs.anl.gov/pub/petsc/release-snapshots
   PETSC_FILE = $(PETSC_NAME)-$(PETSC_VERSION).tar.gz
@@ Line 117: / Line 70: @@
   SLEPC_NAME = slepc
-  SLEPC_VERSION = 3.6.1
+  SLEPC_VERSION = 3.6.2
   SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib
   SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz
@@ Line 268: / Line 221: @@
   	echo "CCP             = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
   	echo "CCD             = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
-  	echo "CFLAGS          = -O3 -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(COMPILER_PATH)/include" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
+  	echo "CFLAGS          = -O3 -DSCOTCH_PTHREAD -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(COMPILER_PATH)/include" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
   	echo "CLIBFLAGS       =" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
   	echo "LDFLAGS         = -lz -lm" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
@@ Line 461: / Line 414: @@
 .bashrc_openmpi:
-  export MPI_HOME="/local/openmpi/intel-15.0.0/1.8.3"
+  export MPI_HOME="/local/openmpi/intel-15.0.0/1.10.1"
   export MPI_INC="$MPI_HOME/include"
   export MPI_LIB="$MPI_HOME/lib"
@@ Line 474: / Line 427: @@
 .bahsrc_hdf5:
-  export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.14"
+  export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.16"
   export HDF5_INC="$HDF5_HOME/include"
   export HDF5_BIN="$HDF5_HOME/bin"
@@ Line 485: / Line 438: @@
 .bashrc_papi:
-  export PAPI_HOME="/local/papi/intel-15.0.0/5.3.2"
+  export PAPI_HOME="/local/papi/intel-15.0.0/5.4.1"
   export PAPI_INC="$PAPI_HOME/include"
   export PAPI_BIN="$PAPI_HOME/bin"
@@ Line 496: / Line 449: @@
 .bashrc_petsc:
-  export PETSC_HOME="/local/petsc/intel-15.0.0/3.5.2/"
+  export PETSC_HOME="/local/petsc/intel-15.0.0/3.6.3/"
   export PETSC_INC="$PETSC_HOME/linux-intel64/include"
   export PETSC_BIN="$PETSC_HOME/linux-intel64/bin"
@@ Line 507: / Line 460: @@
 .bashrc_slepc:
-  export SLEPC_HOME="/local/slepc/intel-15.0.0/3.5.2/"
+  export SLEPC_HOME="/local/slepc/intel-15.0.0/3.6.2/"
   export SLEPC_INC="$SLEPC_HOME/linux-intel64/include"
   export SLEPC_BIN="$SLEPC_HOME/linux-intel64/bin"

@@ Line 61: / Line 61: @@
   OPENMPI_FILE = $(OPENMPI_NAME)-$(OPENMPI_VERSION).tar.bz2
   OPENMPI_CONFIGURE_OPTIONS = --enable-mpi-fortran --enable-static --enable-shared
   FFTW_NAME = fftw
@@ Line 119: / Line 125: @@
   COMPILER_VERSION  = 15.0.0
   COMPILER_PATH     = /opt/intel/composerxe/bin
   COMPILER_CC       = $(COMPILER_PATH)/icc
-  COMPILER_MPICC    = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpicc
+  COMPILER_MPICC    = $(COMPILER_MPI_PATH)/mpicc
   COMPILER_CFLAGS   = "-O2 -g"
   COMPILER_CXX      = $(COMPILER_PATH)/icpc
-  COMPILER_MPICXX   = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpicxx
+  COMPILER_MPICXX   = $(COMPILER_MPI_PATH)/mpicxx
   COMPILER_CXXFLAGS = "-O2 -g"
   COMPILER_FC       = $(COMPILER_PATH)/ifort
-  COMPILER_MPIFC    = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpifort
+  COMPILER_MPIFC    = $(COMPILER_MPI_PATH)/mpifort
   COMPILER_FCFLAGS  = "-O2 -g"
   COMPILER_FF       = $(COMPILER_PATH)/ifort
-  COMPILER_MPIFF    = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpifort
+  COMPILER_MPIFF    = $(COMPILER_MPI_PATH)/mpifort
   COMPILER_FFLAGS   = "-O2 -g"
-  default: $(OPENMPI_NAME)-$(OPENMPI_VERSION) $(FFTW_NAME)-$(FFTW_VERSION) $(HDF5_NAME)-$(HDF5_VERSION) $(PARMETIS_NAME)-$(PARMETIS_VERSION) $(SCOTCH_NAME)-$(SCOTCH_VERSION) $(LAPACK_NAME)-$(LAPACK_VERSION) $(MMG3D4_NAME)-$(MMG3D4_VERSION) $(PAPI_NAME)-$(PAPI_VERSION) $(PETSC_NAME)-$(PETSC_VERSION) $(SLEPC_NAME)-$(SLEPC_VERSION)
+  default: $(OPENMPI_NAME)-$(OPENMPI_VERSION) $(ZLIB_NAME)-$(ZLIB_VERSION) $(FFTW_NAME)-$(FFTW_VERSION) $(HDF5_NAME)-$(HDF5_VERSION) $(PARMETIS_NAME)-$(PARMETIS_VERSION) $(SCOTCH_NAME)-$(SCOTCH_VERSION) $(LAPACK_NAME)-$(LAPACK_VERSION) $(MMG3D4_NAME)-$(MMG3D4_VERSION) $(PAPI_NAME)-$(PAPI_VERSION) $(PETSC_NAME)-$(PETSC_VERSION) $(SLEPC_NAME)-$(SLEPC_VERSION)
   $(OPENMPI_NAME)-$(OPENMPI_VERSION):
@@ Line 150: / Line 157: @@
   	make -j $(NPROCS) &&\
   	rm -rf $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) &&\
   	make install\
+  	)

@@ Line 56: / Line 56: @@
   OPENMPI_NAME = openmpi
-  OPENMPI_VERSION = 1.8.3
+  OPENMPI_VERSION = 1.10.0
-  OPENMPI_MAJOR_VERSION = 1.8
+  OPENMPI_MAJOR_VERSION = 1.10
   OPENMPI_LOCATION = http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads
   OPENMPI_FILE = $(OPENMPI_NAME)-$(OPENMPI_VERSION).tar.bz2

@@ Line 111: / Line 111: @@
   SLEPC_NAME = slepc
-  SLEPC_VERSION = 3.6.2
+  SLEPC_VERSION = 3.6.1
   SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib
   SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz

@@ Line 69: / Line 69: @@
   HDF5_NAME = hdf5
-  HDF5_VERSION = 1.8.14
+  HDF5_VERSION = 1.8.15-patch1
   HDF5_LOCATION = http://www.hdfgroup.org/ftp/HDF5/current/src
   HDF5_FILE = $(HDF5_NAME)-$(HDF5_VERSION).tar.bz2
@@ Line 81: / Line 81: @@
   SCOTCH_NAME = scotch
-  SCOTCH_VERSION = 6.0.3
+  SCOTCH_VERSION = 6.0.4
-  SCOTCH_LOCATION = https://gforge.inria.fr/frs/download.php/34099
+  SCOTCH_LOCATION = https://gforge.inria.fr/frs/download.php/file/34618
   SCOTCH_FILE = $(SCOTCH_NAME)_$(SCOTCH_VERSION).tar.gz
   SCOTCH_CONFIGURE_OPTIONS =
@@ Line 93: / Line 93: @@
   MMG3D4_NAME = mmg3d4
-  MMG3D4_VERSION = 4.0.1
+  MMG3D4_VERSION = 4.0.2
-  MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34048
+  MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34531
   MMG3D4_FILE = $(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source.tar.gz
   MMG3D4_CONFIGURE_OPTIONS =
   PAPI_NAME = papi
-  PAPI_VERSION = 5.3.2
+  PAPI_VERSION = 5.4.1
   PAPI_LOCATION = http://icl.cs.utk.edu/projects/papi/downloads
   PAPI_FILE = $(PAPI_NAME)-$(PAPI_VERSION).tar.gz
@@ Line 105: / Line 105: @@
   PETSC_NAME = petsc
-  PETSC_VERSION = 3.5.2
+  PETSC_VERSION = 3.6.2
   PETSC_LOCATION = http://ftp.mcs.anl.gov/pub/petsc/release-snapshots
   PETSC_FILE = $(PETSC_NAME)-$(PETSC_VERSION).tar.gz
@@ Line 111: / Line 111: @@
   SLEPC_NAME = slepc
-  SLEPC_VERSION = 3.5.2
+  SLEPC_VERSION = 3.6.2
   SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib
   SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz

@@ Line 174: / Line 174: @@
   $(HDF5_NAME)-$(HDF5_VERSION):
   	(\
   	mkdir -p $(INSTALL_DIR)/Downloads &&\
   	mkdir -p $(INSTALL_DIR)/Builds &&\

@@ Line 421: / Line 421: @@
 .bashrc_intel:
-  # intel-14.0.3
+  # intel-15.0.0
   source /opt/intel/composerxe/bin/compilervars.sh intel64
   export INTEL_HOME="/opt/intel/composerxe"
@@ Line 436: / Line 436: @@
 .bashrc_openmpi:
- # openmpi-1.8.1 compiled with intel-14.0.3
+  export MPI_HOME="/local/openmpi/intel-15.0.0/1.8.3"
-  export MPI_HOME="/local/openmpi/intel-14.0.3/1.8.1"
   export MPI_INC="$MPI_HOME/include"
   export MPI_LIB="$MPI_HOME/lib"
@@ Line 450: / Line 449: @@
 .bahsrc_hdf5:
- # hdf5 compiled with intel-14.0.3
+  export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.13"
-  export HDF5_HOME="/local/hdf5/intel-14.0.3/1.8.13"
   export HDF5_INC="$HDF5_HOME/include"
   export HDF5_BIN="$HDF5_HOME/bin"
@@ Line 462: / Line 460: @@
 .bashrc_papi:
- # papi compiled with intel-14.0.3
+  export PAPI_HOME="/local/papi/intel-15.0.0/5.3.2"
-  export PAPI_HOME="/local/papi/intel-14.0.3/5.3.0"
   export PAPI_INC="$PAPI_HOME/include"
   export PAPI_BIN="$PAPI_HOME/bin"
@@ Line 474: / Line 471: @@
 .bashrc_petsc:
- # petsc compiled with intel-14.0.3
+  export PETSC_HOME="/local/petsc/intel-15.0.0/3.5.2/"
-  export PETSC_HOME="/local/petsc/intel-14.0.3/3.4.4/"
   export PETSC_INC="$PETSC_HOME/linux-intel64/include"
   export PETSC_BIN="$PETSC_HOME/linux-intel64/bin"
@@ Line 486: / Line 482: @@
 .bashrc_slepc:
- # slepc compiled with intel-14.0.3
+  export SLEPC_HOME="/local/slepc/intel-15.0.0/3.5.2/"
-  export SLEPC_HOME="/local/slepc/intel-14.0.3/3.4.4/"
   export SLEPC_INC="$SLEPC_HOME/linux-intel64/include"
   export SLEPC_BIN="$SLEPC_HOME/linux-intel64/bin"