Difference between revisions of "Installation script for Z800"

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−
Copy and paste the following lines in .bash_profile:
+
Install [https://software.intel.com/fr-fr/non-commercial-software-development Intel Parallel Studio]
 +
 
 +
Makefile_extlib:
 +
 +
INSTALL_DIR = /
 +
WGET = wget
 +
NPROCS = 8
 +
SHELL=/bin/bash
 +
 +
OPENMPI_NAME = openmpi
 +
OPENMPI_VERSION = 1.10.1
 +
OPENMPI_MAJOR_VERSION = 1.10
 +
OPENMPI_LOCATION = http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads
 +
OPENMPI_FILE = $(OPENMPI_NAME)-$(OPENMPI_VERSION).tar.bz2
 +
OPENMPI_CONFIGURE_OPTIONS = --enable-mpi-fortran --enable-static --enable-shared
 +
 +
ZLIB_NAME = zlib
 +
ZLIB_VERSION = 1.2.8
 +
ZLIB_LOCATION = http://zlib.net
 +
ZLIB_FILE = $(ZLIB_NAME)-$(ZLIB_VERSION).tar.gz
 +
ZLIB_CONFIGURE_OPTIONS =
 +
 +
FFTW_NAME = fftw
 +
FFTW_VERSION = 3.3.4
 +
FFTW_LOCATION = http://www.fftw.org
 +
FFTW_FILE = $(FFTW_NAME)-$(FFTW_VERSION).tar.gz
 +
FFTW_CONFIGURE_OPTIONS =
 +
 +
HDF5_NAME = hdf5
 +
HDF5_VERSION = 1.8.16
 +
HDF5_LOCATION = http://www.hdfgroup.org/ftp/HDF5/current/src
 +
HDF5_FILE = $(HDF5_NAME)-$(HDF5_VERSION).tar.bz2
 +
HDF5_CONFIGURE_OPTIONS = --enable-fortran --enable-cxx
 +
 +
PARMETIS_NAME = parmetis
 +
PARMETIS_VERSION = 4.0.3
 +
PARMETIS_LOCATION = http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis
 +
PARMETIS_FILE = $(PARMETIS_NAME)-$(PARMETIS_VERSION).tar.gz
 +
PARMETIS_CONFIGURE_OPTIONS =
 +
 +
SCOTCH_NAME = scotch
 +
SCOTCH_VERSION = 6.0.4
 +
SCOTCH_LOCATION = https://gforge.inria.fr/frs/download.php/file/34618
 +
SCOTCH_FILE = $(SCOTCH_NAME)_$(SCOTCH_VERSION).tar.gz
 +
SCOTCH_CONFIGURE_OPTIONS =
 +
 +
LAPACK_NAME = lapack
 +
LAPACK_VERSION = 3.6.0
 +
LAPACK_LOCATION = http://www.netlib.org/lapack
 +
LAPACK_FILE = $(LAPACK_NAME)-$(LAPACK_VERSION).tgz
 +
LAPACK_CONFIGURE_OPTIONS =
 +
 +
MMG3D4_NAME = mmg3d4
 +
MMG3D4_VERSION = 4.0.3
 +
MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34531
 +
MMG3D4_FILE = $(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source.tar.gz
 +
MMG3D4_CONFIGURE_OPTIONS =
 +
 +
PAPI_NAME = papi
 +
PAPI_VERSION = 5.4.1
 +
PAPI_LOCATION = http://icl.cs.utk.edu/projects/papi/downloads
 +
PAPI_FILE = $(PAPI_NAME)-$(PAPI_VERSION).tar.gz
 +
PAPI_CONFIGURE_OPTIONS =
 +
 +
PETSC_NAME = petsc
 +
PETSC_VERSION = 3.6.3
 +
PETSC_LOCATION = http://ftp.mcs.anl.gov/pub/petsc/release-snapshots
 +
PETSC_FILE = $(PETSC_NAME)-$(PETSC_VERSION).tar.gz
 +
PETSC_CONFIGURE_OPTIONS =
 +
 +
SLEPC_NAME = slepc
 +
SLEPC_VERSION = 3.6.2
 +
SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib
 +
SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz
 +
SLEPC_CONFIGURE_OPTIONS =
 +
 +
COMPILER_FAMILY  = intel
 +
COMPILER_VERSION  = 15.0.0
 +
COMPILER_PATH    = /opt/intel/composerxe/bin
 +
COMPILER_MPI_PATH = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin
 +
COMPILER_CC      = $(COMPILER_PATH)/icc
 +
COMPILER_MPICC    = $(COMPILER_MPI_PATH)/mpicc
 +
COMPILER_CFLAGS  = "-O2 -g"
 +
COMPILER_CXX      = $(COMPILER_PATH)/icpc
 +
COMPILER_MPICXX  = $(COMPILER_MPI_PATH)/mpicxx
 +
COMPILER_CXXFLAGS = "-O2 -g"
 +
COMPILER_FC      = $(COMPILER_PATH)/ifort
 +
COMPILER_MPIFC    = $(COMPILER_MPI_PATH)/mpifort
 +
COMPILER_FCFLAGS  = "-O2 -g"
 +
COMPILER_FF      = $(COMPILER_PATH)/ifort
 +
COMPILER_MPIFF    = $(COMPILER_MPI_PATH)/mpifort
 +
COMPILER_FFLAGS  = "-O2 -g"
 +
 +
default: $(OPENMPI_NAME)-$(OPENMPI_VERSION) $(ZLIB_NAME)-$(ZLIB_VERSION) $(FFTW_NAME)-$(FFTW_VERSION) $(HDF5_NAME)-$(HDF5_VERSION) $(PARMETIS_NAME)-$(PARMETIS_VERSION) $(SCOTCH_NAME)-$(SCOTCH_VERSION) $(LAPACK_NAME)-$(LAPACK_VERSION) $(MMG3D4_NAME)-$(MMG3D4_VERSION) $(PAPI_NAME)-$(PAPI_VERSION) $(PETSC_NAME)-$(PETSC_VERSION) $(SLEPC_NAME)-$(SLEPC_VERSION)
 +
 +
$(OPENMPI_NAME)-$(OPENMPI_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(OPENMPI_FILE) ]; then $(WGET) $(OPENMPI_LOCATION)/$(OPENMPI_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\
 +
mkdir -p $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(OPENMPI_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\
 +
./configure --prefix=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(OPENMPI_CONFIGURE_OPTIONS)&&\
 +
make -j $(NPROCS) &&\
 +
rm -rf $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) &&\
 +
make install\
 +
)
 +
 +
$(ZLIB_NAME)-$(ZLIB_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(ZLIB_FILE) ]; then $(WGET) $(ZLIB_LOCATION)/$(ZLIB_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_NAME)-$(ZLIB_VERSION) &&\
 +
mkdir -p $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(ZLIB_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_NAME)-$(ZLIB_VERSION) &&\
 +
./configure --prefix=$(INSTALL_DIR)/local/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_VERSION) &&\
 +
make -j $(NPROCS) &&\
 +
rm -rf $(INSTALL_DIR)/local/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_VERSION) &&\
 +
make install\
 +
)
 +
 +
$(FFTW_NAME)-$(FFTW_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(FFTW_FILE) ]; then $(WGET) $(FFTW_LOCATION)/$(FFTW_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\
 +
mkdir -p $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(FFTW_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\
 +
./configure --prefix=$(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(FFTW_CONFIGURE_OPTIONS)&&\
 +
make -j $(NPROCS) &&\
 +
rm -rf $(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) &&\
 +
make install\
 +
)
 +
 +
$(HDF5_NAME)-$(HDF5_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(HDF5_FILE) ]; then $(WGET) $(HDF5_LOCATION)/$(HDF5_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\
 +
mkdir -p $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(HDF5_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\
 +
./configure --prefix=$(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(HDF5_CONFIGURE_OPTIONS)&&\
 +
make -j $(NPROCS) &&\
 +
rm -rf $(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) &&\
 +
make install\
 +
)
 +
 +
$(PARMETIS_NAME)-$(PARMETIS_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
rm -rf  $(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) &&\
 +
rm -rf  $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\
 +
mkdir -p $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(PARMETIS_FILE) ]; then $(WGET) $(PARMETIS_LOCATION)/$(PARMETIS_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(PARMETIS_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\
 +
cd metis &&\
 +
sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\
 +
make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\
 +
make &&\
 +
make install &&\
 +
cd .. &&\
 +
sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\
 +
sed -i 's/cc        = mpicc/cc        = not-set/g' Makefile &&\
 +
sed -i 's/cxx        = mpicxx/cxx        = not-set/g' Makefile &&\
 +
make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\
 +
make &&\
 +
make install \
 +
)
 +
 +
$(SCOTCH_NAME)-$(SCOTCH_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(SCOTCH_FILE) ]; then $(WGET) $(SCOTCH_LOCATION)/$(SCOTCH_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)-$(SCOTCH_VERSION) &&\
 +
mkdir -p $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(SCOTCH_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION) &&\
 +
rm -rf $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\
 +
echo "EXE            =" > $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "LIB            = .a" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "OBJ            = .o" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "MAKE            = make" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "AR              = ar" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "ARFLAGS        = -ruv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CAT            = cat" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CCS            = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CCP            = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CCD            = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CFLAGS          = -O3 -DSCOTCH_PTHREAD -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(COMPILER_PATH)/include" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CLIBFLAGS      =" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "LDFLAGS        = -lz -lm" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "CP              = cp" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "LEX            = flex -Pscotchyy -olex.yy.c" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "LN              = ln" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "MKDIR          = mkdir -p" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "MV              = mv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "RANLIB          = ranlib" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "YACC            = bison -pscotchyy -y -b y" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
echo "prefix          = $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
 +
cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src &&\
 +
make -j $(NPROCS) scotch &&\
 +
make -j $(NPROCS) ptscotch &&\
 +
make install\
 +
)
 +
 +
$(LAPACK_NAME)-$(LAPACK_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(LAPACK_FILE) ]; then $(WGET) $(LAPACK_LOCATION)/$(LAPACK_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\
 +
mkdir -p $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(LAPACK_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\
 +
        rm -f make.inc &&\
 +
        touch make.inc &&\
 +
        echo "SHELL = /bin/sh" >> make.inc &&\
 +
        echo "FORTRAN    = $(COMPILER_MPIFC)" >> make.inc &&\
 +
        echo "OPTS      = $(COMPILER_FCFLAGS)" >> make.inc &&\
 +
        echo "LOADER    = $(COMPILER_MPIFC)" >> make.inc &&\
 +
        echo "DRVOPTS    = $(COMPILER_FCFLAGS)" >> make.inc &&\
 +
        echo "NOOPT      = -O0" >> make.inc &&\
 +
        echo "LOADOPTS  =" >> make.inc &&\
 +
        echo "TIMER      = EXT_ETIME" >> make.inc &&\
 +
        echo "CC        = $(COMPILER_MPICC)" >> make.inc &&\
 +
        echo "CFLAGS    = $(COMPILER_CFLAGS)" >> make.inc &&\
 +
        echo "ARCH      = ar" >> make.inc &&\
 +
        echo "ARCHFLAGS  = cr" >> make.inc &&\
 +
        echo "RANLIB    = ranlib" >> make.inc &&\
 +
        echo "XBLASLIB  =" >> make.inc &&\
 +
        echo "BLASLIB    = ../../librefblas.a" >> make.inc &&\
 +
        echo "LAPACKLIB  = liblapack.a" >> make.inc &&\
 +
        echo "TMGLIB    = libtmglib.a" >> make.inc &&\
 +
        echo "LAPACKELIB = liblapacke.a" >> make.inc &&\
 +
        make -j $(NPROCS) blaslib &&\
 +
        make -j $(NPROCS) lapacklib &&\
 +
        rm -rf $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION) &&\
 +
        mkdir -p $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib &&\
 +
        cp liblapack.a  $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/liblapack.a &&\
 +
        cp librefblas.a $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/libblas.a\
 +
)
 +
 +
 +
$(MMG3D4_NAME)-$(MMG3D4_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(MMG3D4_FILE) ]; then $(WGET) $(MMG3D4_LOCATION)/$(MMG3D4_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\
 +
mkdir -p $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(MMG3D4_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\
 +
export SCOTCH_DIR=$(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\
 +
export CC=$(COMPILER_MPICC) && \
 +
export CXX=$(COMPILER_MPICXX) && \
 +
mkdir build &&\
 +
cd build &&\
 +
cmake -DCMAKE_INSTALL_PREFIX=$(INSTALL_DIR)/local/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_VERSION) .. &&\
 +
make &&\
 +
make install \
 +
)
 +
 +
$(PAPI_NAME)-$(PAPI_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/Builds &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(PAPI_FILE) ]; then $(WGET) $(PAPI_LOCATION)/$(PAPI_FILE); fi &&\
 +
cd $(INSTALL_DIR)/Builds &&\
 +
rm -rf $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\
 +
mkdir -p $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(PAPI_FILE) &&\
 +
cd $(INSTALL_DIR)/Builds/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\
 +
cd src &&\
 +
export F77=$(COMPILER_F77) && export CC=$(COMPILER_CC) && ./configure --prefix=$(INSTALL_DIR)/local/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_VERSION) &&\
 +
make -j $(NPROCS)&&\
 +
make install \
 +
)
 +
 +
$(PETSC_NAME)-$(PETSC_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(PETSC_FILE) ]; then $(WGET) $(PETSC_LOCATION)/$(PETSC_FILE); fi &&\
 +
cd $(INSTALL_DIR)/local &&\
 +
rm -rf $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) &&\
 +
mkdir -p $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(PETSC_FILE) &&\
 +
cd $(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
mv $(PETSC_NAME)-$(PETSC_VERSION) $(PETSC_VERSION) &&\
 +
cd $(PETSC_VERSION) &&\
 +
unset PETSC_DIR && ./configure PETSC_ARCH=linux-intel64 --with-mpi-dir=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) --download-hypre --with-blas-lapack-dir=/opt/intel/mkl &&\
 +
make PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 all \
 +
)
 +
 +
$(SLEPC_NAME)-$(SLEPC_VERSION):
 +
(\
 +
mkdir -p $(INSTALL_DIR)/Downloads &&\
 +
mkdir -p $(INSTALL_DIR)/local &&\
 +
cd $(INSTALL_DIR)/Downloads &&\
 +
if [ ! -f $(SLEPC_FILE) ]; then $(WGET) $(SLEPC_LOCATION)/$(SLEPC_FILE); fi &&\
 +
cd $(INSTALL_DIR)/local &&\
 +
rm -rf $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) &&\
 +
mkdir -p $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
cd $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
tar -xvf $(INSTALL_DIR)/Downloads/$(SLEPC_FILE) &&\
 +
cd $(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
 +
mv $(SLEPC_NAME)-$(SLEPC_VERSION) $(SLEPC_VERSION) &&\
 +
cd $(SLEPC_VERSION) &&\
 +
export PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) && export PETSC_ARCH=linux-intel64 && ./configure &&\
 +
make SLEPC_DIR=$(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 \
 +
)
 +
 +
 
 +
.bash_profile / .bashrc:
 +
#==================#
 +
# SECTION 1: aliases
 +
 
  alias l='ls -l'
 
  alias l='ls -l'
−
  export PATH=$PATH:/local/openmpi-1.6/bin
+
   
−
  export LD_LIBRARY_PATH="/local/openmpi-1.6/lib:$LD_LIBRARY_PATH"
+
# end of SECTION 1
−
  export LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libc/memcpy-preload.so
+
#==================#
 +
 +
 +
#==================#
 +
# SECTION 2: compilers
 +
 +
# crt stuff
 +
  export LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH"
 +
  export LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH"
 +
 +
# compiler and libraries
 +
source ~/.bashrc_intel
 +
source ~/.bashrc_openmpi
 +
source ~/.bashrc_hdf5
 +
source ~/.bashrc_papi
 +
source ~/.bashrc_petsc
 +
source ~/.bashrc_slepc
 +
 +
# end of SECTION 2
 +
#==================#
 +
 +
#==================#
 +
# SECTION 3: applications
 +
 +
# yales2
 +
source ~/yales2/platforms/xxxx.bash.env
 +
 +
# end of SECTION 3
 +
#==================#
  
−
Copy and paste this in a file called Install.make:
 
  
−
  INSTALL_DIR = /
+
.bashrc_intel:
 +
 
 +
  # intel-15.0.0
 +
source /opt/intel/composerxe/bin/compilervars.sh intel64
 +
export INTEL_HOME="/opt/intel/composerxe"
 +
export INTEL_INC="$INTEL_HOME/include"
 +
export INTEL_LIB="$INTEL_HOME/lib"
 +
export INTEL_BIN="$INTEL_HOME/bin"
 +
export INTEL_MAN="$INTEL_HOME/man"
 +
export PATH="$INTEL_BIN:$PATH"
 +
export LIBRARY_PATH="$INTEL_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$INTEL_LIB:$LD_LIBRARY_PATH"
 +
export MANPATH="$INTEL_MAN:$MANPATH"
 +
 
 +
 
 +
.bashrc_openmpi:
 +
 
 +
export MPI_HOME="/local/openmpi/intel-15.0.0/1.10.1"
 +
export MPI_INC="$MPI_HOME/include"
 +
export MPI_LIB="$MPI_HOME/lib"
 +
export MPI_BIN="$MPI_HOME/bin"
 +
export MPI_MAN="$MPI_HOME/share/man"
 +
export PATH="$MPI_BIN:$PATH"
 +
export LIBRARY_PATH="$MPI_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$MPI_LIB:$LD_LIBRARY_PATH"
 +
export MANPATH="$MPI_MAN:$MANPATH"
 +
 
 +
 
 +
.bahsrc_hdf5:
 +
 
 +
export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.16"
 +
export HDF5_INC="$HDF5_HOME/include"
 +
export HDF5_BIN="$HDF5_HOME/bin"
 +
export HDF5_LIB="$HDF5_HOME/lib"
 +
export PATH="$HDF5_BIN:$PATH"
 +
export LIBRARY_PATH="$HDF5_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$HDF5_LIB:$LD_LIBRARY_PATH"
 +
 
 +
 
 +
.bashrc_papi:
 +
 
 +
export PAPI_HOME="/local/papi/intel-15.0.0/5.4.1"
 +
export PAPI_INC="$PAPI_HOME/include"
 +
export PAPI_BIN="$PAPI_HOME/bin"
 +
export PAPI_LIB="$PAPI_HOME/lib"
 +
export PATH="$PAPI_BIN:$PATH"
 +
export LIBRARY_PATH="$PAPI_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$PAPI_LIB:$LD_LIBRARY_PATH"
 +
 
 +
 
 +
.bashrc_petsc:
 +
 
 +
export PETSC_HOME="/local/petsc/intel-15.0.0/3.6.3/"
 +
export PETSC_INC="$PETSC_HOME/linux-intel64/include"
 +
export PETSC_BIN="$PETSC_HOME/linux-intel64/bin"
 +
export PETSC_LIB="$PETSC_HOME/linux-intel64/lib"
 +
export PATH="$PETSC_BIN:$PATH"
 +
export LIBRARY_PATH="$PETSC_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$PETSC_LIB:$LD_LIBRARY_PATH"
 +
 
 +
 
 +
.bashrc_slepc:
 +
 
 +
export SLEPC_HOME="/local/slepc/intel-15.0.0/3.6.2/"
 +
export SLEPC_INC="$SLEPC_HOME/linux-intel64/include"
 +
export SLEPC_BIN="$SLEPC_HOME/linux-intel64/bin"
 +
export SLEPC_LIB="$SLEPC_HOME/linux-intel64/lib"
 +
export PATH="$SLEPC_BIN:$PATH"
 +
export LIBRARY_PATH="$SLEPC_LIB:$LIBRARY_PATH"
 +
export LD_LIBRARY_PATH="$SLEPC_LIB:$LD_LIBRARY_PATH"
 +
 
 +
 
 +
For RHEL 7 platforms:
 +
 
 +
# Avant le premier boot
 +
# 1/ mettre les 4 disques de 4TB dans les 4 baies du bas
 +
# 2/ mettre le disque SSD de 256GB dans la baie du haut
 
   
 
   
−
  COMPILER_DIR = /local/gcc-4.7.2
+
  # Au boot
−
  F77  = $(COMPILER_DIR)/bin/gfortran
+
  # 1/ créer le raid matériel
−
  FC    = $(COMPILER_DIR)/bin/gfortran
+
  # 2/ boot UEFI sur le SSD
−
  CC    = $(COMPILER_DIR)/bin/gcc
+
  # 3/ Désactiver HyperThreading
−
  CXX  = $(COMPILER_DIR)/bin/g++
+
  # 4/ Désactiver IntelBoost
−
CPP  = $(COMPILER_DIR)/bin/cpp
+
−
CXXPP = $(COMPILER_DIR)/bin/cpp
+
 
   
 
   
−
  NPROCS = 8
+
  # finir l’install RHEL
 +
# créer admincoria/root avec un mdp toto (ATTENTION AU CLAVIER AMERICAIN)
 +
 +
# clavier francais au boot
 +
localectl set-locale LANG=en_US.utf8
 +
localectl set-x11-keymap fr
 +
localectl set-keymap fr
 +
 +
# remettre les mdp classiques pour admincoria et root
 +
 +
# modifier le nom de la machine
 +
vi /etc/hostname
 +
 +
# associer un numéro RHN
 +
subscription-manager register --username=admincoria --password=XXXXXXXX --auto-attach
 +
 +
# créer une table de partition gpt et une partition sur /dev/sda (RAID matériel)
 +
parted /dev/sda
 +
mktable gpt
 +
mkpart primary xfs 64MB 100%
 +
 +
# créer un filesysteme pour /home
 +
mkfs -t xfs /dev/sda1
 +
 +
# deménager l’ancien home et créer le nouveau
 +
umount /home
 +
mount /dev/sda1 /home
 +
mkdir /home2
 +
mount /dev/rhel/home /home2
 +
mv /home2/admincoria /home/admincoria
 +
umount /home2
 +
 +
# modifier /etc/fstab
 +
/dev/sda1              /home                  xfs    defaults        1 2
 +
#==> PENSER A ENLEVER LA LIGNE /dev/rhel/home
 +
 +
# commandes utils pour lvm
 +
lvmdiskscan
 +
vgscan
 +
vgdisplay
 +
lvdisplay
 +
 +
# enlever le volume logique de /home sur le SSD
 +
lvremove /dev/rhel/home
 +
 +
# augmenter la taille de / à 100% de la place dispo
 +
lvextend -l +100%FREE /dev/rhel/root
 +
 +
# augmenter la taille de / jusqu’au maxi dispo
 +
df -k
 +
xfs_info /
 +
xfs_growfs /
 +
df -k
 +
 +
# ajouter le EPEL 7.2
 +
rpm -Uvh http://download.fedoraproject.org/pub/epel/7/x86_64/e/epel-release-7-2.noarch.rpm
 
   
 
   
−
  SED_VERSION = 4.2.2
+
  # ajouter les bons repos
−
  FFTW_VERSION = 3.3.3
+
  subscription-manager repos --enable rhel-7-workstation-extras-rpms
−
OPENMPI_MINOR_VERSION = 1.6.4
+
  subscription-manager repos --enable rhel-7-workstation-optional-rpms
−
OPENMPI_MAJOR_VERSION = 1.6
+
  subscription-manager repos --enable rhel-7-workstation-rhn-tools-rpms
−
HDF5_VERSION = 1.8.10-patch1
+
−
  LAPACK_VERSION = 3.4.2
+
−
PARMETIS_VERSION = 3.2.0
+
−
SCOTCH_VERSION = 6.0.0
+
−
PETSC_VERSION = 3.3-p6
+
−
  SLEPC_VERSION = 3.3-p3
+
 
   
 
   
−
  all: structure sed fftw openmpi hdf5 lapack ParMetis scotch petsc slepc
+
  # MaJ système
 +
yum update -y
 
   
 
   
−
  freenx-ocelot:
+
  # install
−
sudo apt-get install libaudiofile0
+
yum install -y x2goserver
−
sudo add-apt-repository -y ppa:freenx-team
+
yum install -y gparted
−
sudo sed -i 's/oneiric/lucid/g' /etc/apt/sources.list.d/freenx-team-ppa-oneiric.list
+
yum install -y fail2ban
−
sudo apt-get update && sudo apt-get upgrade
+
yum install -y zlib
−
wget -P /tmp http://de.archive.ubuntu.com/ubuntu/pool/main/e/esound/esound-common_0.2.41-8_all.deb
+
yum install -y linuxdoc-tools
−
wget -P /tmp http://de.archive.ubuntu.com/ubuntu/pool/main/e/esound/libesd0_0.2.41-8_amd64.deb
+
yum install -y gnuplot
−
wget -P /tmp http://de.archive.ubuntu.com/ubuntu/pool/main/e/esound/esound-clients_0.2.41-8_amd64.deb
+
yum install -y paraview
−
sudo dpkg -i /tmp/esound-common_0.2.41-8_all.deb
+
yum install -y lzip
−
sudo dpkg -i /tmp/libesd0_0.2.41-8_amd64.deb
+
yum install -y xorg-x11-fonts*
−
sudo dpkg -i /tmp/esound-clients_0.2.41-8_amd64.deb
+
yum install -y htop emacs xemacs
−
sudo apt-get -f -y install
+
−
sudo rm -f /tmp/esound-common_0.2.41-8_all.deb /tmp/libesd0_0.2.41-8_amd64.deb /tmp/esound-clients_0.2.41-8_amd64.deb
+
−
sudo apt-get install -y freenx
+
−
cd /tmp && wget https://bugs.launchpad.net/freenx-server/+bug/576359/+attachment/1378450/+files/nxsetup.tar.gz && tar zxvf nxsetup.tar.gz
+
−
sudo cp /tmp/nxsetup /usr/lib/nx/nxsetup
+
−
-sudo /usr/lib/nx/nxsetup --install --setup-nomachine-key
+
−
sudo rm -f /tmp/nxsetup /tmp/nxsetup.tar.gz
+
−
sudo touch /etc/apt/preferences
+
−
sudo sh -c "echo Package: esound-common >> /etc/apt/preferences"
+
−
sudo sh -c "echo Pin: version 0.2.41-8 >> /etc/apt/preferences"
+
−
sudo sh -c "echo Pin-priority: 1001 >> /etc/apt/preferences"
+
−
sudo sh -c "echo >> /etc/apt/preferences"
+
−
sudo sh -c "echo Package: libesd0 >> /etc/apt/preferences"
+
−
sudo sh -c "echo Pin: version 0.2.41-8 >> /etc/apt/preferences"
+
−
sudo sh -c "echo Pin-priority: 1001 >> /etc/apt/preferences"
+
 
   
 
   
−
  packages:
+
  # rapatrier clé ssh admincoria puis chmod 700 .ssh
−
sudo apt-get install -y nvidia-current
+
−
sudo apt-get install -y ubuntu-desktop
+
−
sudo apt-get install -y tcsh
+
−
sudo apt-get install -y ssh
+
−
sudo apt-get install -y g++
+
−
sudo apt-get install -y gdb
+
−
sudo apt-get install -y gfortran
+
−
sudo apt-get install -y cmake
+
−
sudo apt-get install -y flex
+
−
sudo apt-get install -y bison
+
−
sudo apt-get install -y git
+
−
sudo apt-get install -y gitk
+
−
sudo apt-get install -y subversion
+
−
sudo apt-get install -y rapidsvn
+
−
sudo apt-get install -y vim-gnome
+
−
sudo apt-get install -y lib32z1-dev
+
−
sudo apt-get install -y zlib1g-dev
+
−
sudo apt-get install -y tkcvs
+
−
sudo apt-get install -y default-jre
+
−
sudo apt-get install -y gparted
+
−
sudo apt-get install -y synaptic
+
−
sudo apt-get install -y eclipse
+
−
sudo apt-get install -y paraview
+
−
sudo apt-get install -y browser-plugin-gnash
+
−
sudo apt-get install -y grace
+
−
sudo apt-get install -y gnuplot
+
−
sudo apt-get install -y filezilla
+
−
sudo apt-get install -y dselect
+
−
sudo apt-get install -y emacs
+
−
sudo apt-get install -y xemacs21
+
−
sudo apt-get install -y meld
+
−
sudo apt-get install -y hdfview
+
−
sudo apt-get install -y vlc
+
 
   
 
   
−
  gambit:
+
  # modifier la config ssh et redémarrer ssh
−
wget -P /tmp http://ubuntu.mirror.cambrium.nl/ubuntu//pool/multiverse/o/openmotif/libmotif3_2.2.3-4_amd64.deb && sudo dpkg -i /tmp/libmotif3_2.2.3-4_amd64.deb
+
vi /etc/ssh/sshd_config
−
sudo apt-get install libstdc++5 xfs xfstt xfonts-75dpi xfonts-100dpi
+
RSAAuthentication yes
−
rm /tmp/libmotif3_2.2.3-4_amd64.deb
+
PubkeyAuthentication yes
 +
#PasswordAuthentication yes
 +
PasswordAuthentication no
 +
KerberosAuthentication no
 +
GSSAPIAuthentication no
 
   
 
   
−
  structure:
+
  systemctl restart sshd.service
−
mkdir -p $(INSTALL_DIR)/Downloads
+
−
mkdir -p $(INSTALL_DIR)/Builds
+
−
mkdir -p $(INSTALL_DIR)/local
+
 
   
 
   
−
  sed: structure
+
  # set fail2ban
−
(cd $(INSTALL_DIR)/Downloads && wget http://ftp.gnu.org/gnu/sed/sed-$(SED_VERSION).tar.bz2)
+
vi /etc/fail2ban/jail.conf
−
(cd $(INSTALL_DIR)/Builds && tar -jxvf $(INSTALL_DIR)/Downloads/sed-$(SED_VERSION).tar.bz2)
+
ignoreip = 127.0.0.1/8 194.254.16.0/24 88.184.97.196
−
(cd $(INSTALL_DIR)/Builds/sed-$(SED_VERSION) && ./configure --prefix=$(INSTALL_DIR)/local/sed-$(SED_VERSION) && make -j $(NPROCS) && make install)
+
bantime  = 86400
 +
findtime  = 86400
 +
[sshd]
 +
enabled  = true
 +
port    = ssh
 +
logpath = %(sshd_log)s
 +
[sshd-ddos]
 +
enabled  = true
 +
port    = ssh
 +
logpath = %(sshd_log)s
 
   
 
   
−
  fftw: structure
+
  fail2ban-server
−
(cd $(INSTALL_DIR)/Downloads && wget http://www.fftw.org/fftw-$(FFTW_VERSION).tar.gz)
+
fail2ban-client reload
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/fftw-$(FFTW_VERSION).tar.gz)
+
chkconfig fail2ban on
−
(cd $(INSTALL_DIR)/Builds/fftw-$(FFTW_VERSION) && ./configure --prefix=$(INSTALL_DIR)/local/fftw-$(FFTW_VERSION) && make -j $(NPROCS) && make install)
+
 
   
 
   
−
  openmpi: structure
+
  # install intel dans /opt en tant qu'admincoria
−
(cd $(INSTALL_DIR)/Downloads && wget http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads/openmpi-$(OPENMPI_MINOR_VERSION).tar.bz2)
+
rsync azuv amdincoria@luis:/opt/intel /tmp
−
(cd $(INSTALL_DIR)/Builds && tar -jxvf $(INSTALL_DIR)/Downloads/openmpi-$(OPENMPI_MINOR_VERSION).tar.bz2)
+
mv /tmp/intel /opt
−
(cd $(INSTALL_DIR)/Builds/openmpi-$(OPENMPI_MINOR_VERSION) && ./configure --prefix=$(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION) --enable-mpi-f90 && make -j $(NPROCS) && make install)
+
chown -R root:root /opt/intel
 
   
 
   
−
  hdf5: structure
+
  # créer les .bashrc_* dans /etc/skel
−
(cd $(INSTALL_DIR)/Downloads && wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-$(HDF5_VERSION).tar.bz2)
+
source .bashrc_intel
−
(cd $(INSTALL_DIR)/Builds && tar -jxvf $(INSTALL_DIR)/Downloads/hdf5-$(HDF5_VERSION).tar.bz2)
+
−
(cd $(INSTALL_DIR)/Builds/hdf5-$(HDF5_VERSION) && ./configure --prefix=$(INSTALL_DIR)/local/hdf5-$(HDF5_VERSION) --enable-fortran --enable-cxx && make -j $(NPROCS) && make install)
+
 
   
 
   
−
  lapack: structure
+
  # Install librairies (Makefile sur coria-cfd)
−
(cd $(INSTALL_DIR)/Downloads && wget http://www.netlib.org/lapack/lapack-$(LAPACK_VERSION).tgz)
+
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/lapack-$(LAPACK_VERSION).tgz)
+
−
(cd $(INSTALL_DIR)/Builds/lapack-$(LAPACK_VERSION) && cp make.inc.example make.inc && make -j $(NPROCS) blaslib && make -j $(NPROCS) lapacklib)
+
−
mkdir -p $(INSTALL_DIR)/local/blas/lib
+
−
mkdir -p $(INSTALL_DIR)/local/lapack/lib
+
−
ln -s $(INSTALL_DIR)/Builds/lapack-$(LAPACK_VERSION)/liblapack.a $(INSTALL_DIR)/local/lapack/lib/liblapack.a
+
−
ln -s $(INSTALL_DIR)/Builds/lapack-$(LAPACK_VERSION)/librefblas.a $(INSTALL_DIR)/local/blas/lib/libblas.a
+
 
   
 
   
−
  ParMetis: structure
+
  # installer grace
−
(cd $(INSTALL_DIR)/Downloads && wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD/ParMetis-$(PARMETIS_VERSION).tar.gz)
+
wget ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable/grace-5.1.24.tar.gz
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/ParMetis-$(PARMETIS_VERSION).tar.gz)
+
./configure --prefix=/local
−
echo "CC = $(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION)/bin/mpicc" > $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
make -j 8
−
echo "OPTFLAGS = -O3" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
make install
−
echo "INCDIR =" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "COPTIONS = -DNDEBUG" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "LD = $(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION)/bin/mpicc" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "LIBDIR =" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "AR = ar rv" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "RANLIB = ar -ts" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
echo "VERNUM = $(PARMETIS_VERSION)" >> $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/Makefile.in
+
−
(cd $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION) && make -j $(NPROCS))
+
−
mkdir -p $(INSTALL_DIR)/local/ParMetis-$(PARMETIS_VERSION)/lib
+
−
mkdir -p $(INSTALL_DIR)/local/ParMetis-$(PARMETIS_VERSION)/include
+
−
ln -s $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/*.a $(INSTALL_DIR)/local/ParMetis-$(PARMETIS_VERSION)/lib/
+
−
ln -s $(INSTALL_DIR)/Builds/ParMetis-$(PARMETIS_VERSION)/*.h $(INSTALL_DIR)/local/ParMetis-$(PARMETIS_VERSION)/include/
+
 
   
 
   
−
  scotch: structure
+
  # créer les utilisateurs
−
(cd $(INSTALL_DIR)/Downloads && wget https://gforge.inria.fr/frs/download.php/31831/scotch_$(SCOTCH_VERSION).tar.gz)
+
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/scotch_$(SCOTCH_VERSION).tar.gz)
+
−
echo "EXE            =" > $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "LIB            = .a" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "OBJ            = .o" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "MAKE            = make" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "AR              = ar" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "ARFLAGS        = -ruv" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CAT            = cat" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CCS            = $(CC)" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CCP            = $(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION)/bin/mpicc" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CCD            = $(CC)" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CFLAGS          = -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION)/include" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CLIBFLAGS      =" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "LDFLAGS        = -lz -lm -lrt" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "CP              = cp" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "LEX            = flex -Pscotchyy -olex.yy.c" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "LN              = ln" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "MKDIR          = mkdir -p" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "MV              = mv" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "RANLIB          = ranlib" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "YACC            = bison -pscotchyy -y -b y" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
echo "prefix          = $(INSTALL_DIR)/local/scotch_$(SCOTCH_VERSION)" >> $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src/Makefile.inc
+
−
(cd $(INSTALL_DIR)/Builds/scotch_$(SCOTCH_VERSION)/src && make -j $(NPROCS) scotch && make -j $(NPROCS) ptscotch && make install)
+
 
   
 
   
−
  petsc: structure
+
  # rapatrier maqao
−
(cd $(INSTALL_DIR)/Downloads && wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-$(PETSC_VERSION).tar.gz)
+
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/petsc-$(PETSC_VERSION).tar.gz)
+
−
(cd $(INSTALL_DIR)/Builds/petsc-$(PETSC_VERSION) && export LD_LIBRARY_PATH="$(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION)/lib:$LD_LIBRARY_PATH" && ./configure --prefix=$(INSTALL_DIR)/local/petsc-$(PETSC_VERSION) --download-hypre=yes --with-mpi-dir=$(INSTALL_DIR)/local/openmpi-$(OPENMPI_MINOR_VERSION) --with-blas-lib=$(INSTALL_DIR)/local/blas/lib/libblas.a --with-lapack-lib=$(INSTALL_DIR)/local/lapack/lib/liblapack.a --CPP=$(CPP) && make -j $(NPROCS) PETSC_DIR=$(INSTALL_DIR)/Builds/petsc-$(PETSC_VERSION) PETSC_ARCH=arch-linux2-c-debug all && make PETSC_DIR=$(INSTALL_DIR)/Builds/petsc-$(PETSC_VERSION) PETSC_ARCH=arch-linux2-c-debug install)
+
 
   
 
   
−
  slepc: structure
+
  # VLC & mencoder & ffmpeg
−
(cd $(INSTALL_DIR)/Downloads && wget http://www.grycap.upv.es/slepc/download/download.php?filename=slepc-$(SLEPC_VERSION).tar.gz)
+
rpm -Uvh http://li.nux.ro/download/nux/dextop/el7/x86_64/nux-dextop-release-0-1.el7.nux.noarch.rpm
−
(cd $(INSTALL_DIR)/Builds && tar -zxvf $(INSTALL_DIR)/Downloads/slepc-$(SLEPC_VERSION).tar.gz)
+
yum -y update
−
(cd $(INSTALL_DIR)/Builds/slepc-$(SLEPC_VERSION) && export SLEPC_DIR=/Builds/slepc-3.3-p3 && export PETSC_DIR=/Builds/petsc-3.3-p6 && export PETSC_ARCH=arch-linux2-c-debug && ./configure && make -j $(NPROCS) PETSC_DIR=$(INSTALL_DIR)/Builds/petsc-$(PETSC_VERSION) PETSC_ARCH=arch-linux2-c-debug all &&  mkdir $(INSTALL_DIR)/local/slepc-3.3-p3/ && cd $(INSTALL_DIR)/local/slepc-$(SLEPC_VERSION) && ln -s $(INSTALL_DIR)/Builds/slepc-$(SLEPC_VERSION)/include ./include1 && ln -s $(INSTALL_DIR)/Builds/slepc-$(SLEPC_VERSION)/arch-linux2-c-debug/include ./include2 && ln -s $(INSTALL_DIR)/Builds/slepc-$(SLEPC_VERSION)/arch-linux2-c-debug/lib ./lib)
+
  yum install -y vlc mencoder ffmpeg
−
 
+
−
  clean:
+
−
echo
+
  
  

Latest revision as of 02:42, 5 December 2015

Install Intel Parallel Studio

Makefile_extlib: 

INSTALL_DIR = /
WGET = wget
NPROCS = 8
SHELL=/bin/bash

OPENMPI_NAME = openmpi
OPENMPI_VERSION = 1.10.1
OPENMPI_MAJOR_VERSION = 1.10
OPENMPI_LOCATION = http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads
OPENMPI_FILE = $(OPENMPI_NAME)-$(OPENMPI_VERSION).tar.bz2
OPENMPI_CONFIGURE_OPTIONS = --enable-mpi-fortran --enable-static --enable-shared

ZLIB_NAME = zlib
ZLIB_VERSION = 1.2.8
ZLIB_LOCATION = http://zlib.net
ZLIB_FILE = $(ZLIB_NAME)-$(ZLIB_VERSION).tar.gz
ZLIB_CONFIGURE_OPTIONS =

FFTW_NAME = fftw
FFTW_VERSION = 3.3.4
FFTW_LOCATION = http://www.fftw.org
FFTW_FILE = $(FFTW_NAME)-$(FFTW_VERSION).tar.gz
FFTW_CONFIGURE_OPTIONS =

HDF5_NAME = hdf5
HDF5_VERSION = 1.8.16
HDF5_LOCATION = http://www.hdfgroup.org/ftp/HDF5/current/src
HDF5_FILE = $(HDF5_NAME)-$(HDF5_VERSION).tar.bz2
HDF5_CONFIGURE_OPTIONS = --enable-fortran --enable-cxx

PARMETIS_NAME = parmetis
PARMETIS_VERSION = 4.0.3
PARMETIS_LOCATION = http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis
PARMETIS_FILE = $(PARMETIS_NAME)-$(PARMETIS_VERSION).tar.gz
PARMETIS_CONFIGURE_OPTIONS =

SCOTCH_NAME = scotch
SCOTCH_VERSION = 6.0.4
SCOTCH_LOCATION = https://gforge.inria.fr/frs/download.php/file/34618
SCOTCH_FILE = $(SCOTCH_NAME)_$(SCOTCH_VERSION).tar.gz
SCOTCH_CONFIGURE_OPTIONS =

LAPACK_NAME = lapack
LAPACK_VERSION = 3.6.0
LAPACK_LOCATION = http://www.netlib.org/lapack
LAPACK_FILE = $(LAPACK_NAME)-$(LAPACK_VERSION).tgz
LAPACK_CONFIGURE_OPTIONS =

MMG3D4_NAME = mmg3d4
MMG3D4_VERSION = 4.0.3
MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34531
MMG3D4_FILE = $(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source.tar.gz
MMG3D4_CONFIGURE_OPTIONS =

PAPI_NAME = papi
PAPI_VERSION = 5.4.1
PAPI_LOCATION = http://icl.cs.utk.edu/projects/papi/downloads
PAPI_FILE = $(PAPI_NAME)-$(PAPI_VERSION).tar.gz
PAPI_CONFIGURE_OPTIONS =

PETSC_NAME = petsc
PETSC_VERSION = 3.6.3
PETSC_LOCATION = http://ftp.mcs.anl.gov/pub/petsc/release-snapshots
PETSC_FILE = $(PETSC_NAME)-$(PETSC_VERSION).tar.gz
PETSC_CONFIGURE_OPTIONS =

SLEPC_NAME = slepc
SLEPC_VERSION = 3.6.2
SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib
SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz
SLEPC_CONFIGURE_OPTIONS =

COMPILER_FAMILY   = intel
COMPILER_VERSION  = 15.0.0
COMPILER_PATH     = /opt/intel/composerxe/bin
COMPILER_MPI_PATH = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin
COMPILER_CC       = $(COMPILER_PATH)/icc
COMPILER_MPICC    = $(COMPILER_MPI_PATH)/mpicc
COMPILER_CFLAGS   = "-O2 -g"
COMPILER_CXX      = $(COMPILER_PATH)/icpc
COMPILER_MPICXX   = $(COMPILER_MPI_PATH)/mpicxx
COMPILER_CXXFLAGS = "-O2 -g"
COMPILER_FC       = $(COMPILER_PATH)/ifort
COMPILER_MPIFC    = $(COMPILER_MPI_PATH)/mpifort
COMPILER_FCFLAGS  = "-O2 -g"
COMPILER_FF       = $(COMPILER_PATH)/ifort
COMPILER_MPIFF    = $(COMPILER_MPI_PATH)/mpifort
COMPILER_FFLAGS   = "-O2 -g"

default: $(OPENMPI_NAME)-$(OPENMPI_VERSION) $(ZLIB_NAME)-$(ZLIB_VERSION) $(FFTW_NAME)-$(FFTW_VERSION) $(HDF5_NAME)-$(HDF5_VERSION) $(PARMETIS_NAME)-$(PARMETIS_VERSION) $(SCOTCH_NAME)-$(SCOTCH_VERSION) $(LAPACK_NAME)-$(LAPACK_VERSION) $(MMG3D4_NAME)-$(MMG3D4_VERSION) $(PAPI_NAME)-$(PAPI_VERSION) $(PETSC_NAME)-$(PETSC_VERSION) $(SLEPC_NAME)-$(SLEPC_VERSION)

$(OPENMPI_NAME)-$(OPENMPI_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(OPENMPI_FILE) ]; then $(WGET) $(OPENMPI_LOCATION)/$(OPENMPI_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\
	mkdir -p $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(OPENMPI_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\
	./configure --prefix=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(OPENMPI_CONFIGURE_OPTIONS)&&\
	make -j $(NPROCS) &&\
	rm -rf $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) &&\
	make install\
	)

$(ZLIB_NAME)-$(ZLIB_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(ZLIB_FILE) ]; then $(WGET) $(ZLIB_LOCATION)/$(ZLIB_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_NAME)-$(ZLIB_VERSION) &&\
	mkdir -p $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(ZLIB_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_NAME)-$(ZLIB_VERSION) &&\
	./configure --prefix=$(INSTALL_DIR)/local/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_VERSION) &&\
	make -j $(NPROCS) &&\
	rm -rf $(INSTALL_DIR)/local/$(ZLIB_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(ZLIB_VERSION) &&\
	make install\
	)

$(FFTW_NAME)-$(FFTW_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(FFTW_FILE) ]; then $(WGET) $(FFTW_LOCATION)/$(FFTW_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\
	mkdir -p $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(FFTW_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\
	./configure --prefix=$(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(FFTW_CONFIGURE_OPTIONS)&&\
	make -j $(NPROCS) &&\
	rm -rf $(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) &&\
	make install\
	)

$(HDF5_NAME)-$(HDF5_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(HDF5_FILE) ]; then $(WGET) $(HDF5_LOCATION)/$(HDF5_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\
	mkdir -p $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(HDF5_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\
	./configure --prefix=$(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(HDF5_CONFIGURE_OPTIONS)&&\
	make -j $(NPROCS) &&\
	rm -rf $(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) &&\
	make install\
	)

$(PARMETIS_NAME)-$(PARMETIS_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	rm -rf   $(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) &&\
	rm -rf   $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\
	mkdir -p $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(PARMETIS_FILE) ]; then $(WGET) $(PARMETIS_LOCATION)/$(PARMETIS_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(PARMETIS_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\
	cd metis &&\
	sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\
	make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\
	make &&\
	make install &&\
	cd .. &&\
	sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\
	sed -i 's/cc         = mpicc/cc         = not-set/g' Makefile &&\
	sed -i 's/cxx        = mpicxx/cxx        = not-set/g' Makefile &&\
	make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\
	make &&\
	make install \
	)

$(SCOTCH_NAME)-$(SCOTCH_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(SCOTCH_FILE) ]; then $(WGET) $(SCOTCH_LOCATION)/$(SCOTCH_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)-$(SCOTCH_VERSION) &&\
	mkdir -p $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(SCOTCH_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION) &&\
	rm -rf $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\
	echo "EXE             =" > $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "LIB             = .a" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "OBJ             = .o" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "MAKE            = make" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "AR              = ar" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "ARFLAGS         = -ruv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CAT             = cat" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CCS             = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CCP             = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CCD             = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CFLAGS          = -O3 -DSCOTCH_PTHREAD -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(COMPILER_PATH)/include" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CLIBFLAGS       =" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "LDFLAGS         = -lz -lm" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "CP              = cp" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "LEX             = flex -Pscotchyy -olex.yy.c" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "LN              = ln" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "MKDIR           = mkdir -p" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "MV              = mv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "RANLIB          = ranlib" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "YACC            = bison -pscotchyy -y -b y" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	echo "prefix          = $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\
	cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src &&\
	make -j $(NPROCS) scotch &&\
	make -j $(NPROCS) ptscotch &&\
	make install\
	)

$(LAPACK_NAME)-$(LAPACK_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(LAPACK_FILE) ]; then $(WGET) $(LAPACK_LOCATION)/$(LAPACK_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\
	mkdir -p $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(LAPACK_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\
        rm -f make.inc &&\
        touch make.inc &&\
        echo "SHELL = /bin/sh" >> make.inc &&\
        echo "FORTRAN    = $(COMPILER_MPIFC)" >> make.inc &&\
        echo "OPTS       = $(COMPILER_FCFLAGS)" >> make.inc &&\
        echo "LOADER     = $(COMPILER_MPIFC)" >> make.inc &&\
        echo "DRVOPTS    = $(COMPILER_FCFLAGS)" >> make.inc &&\
        echo "NOOPT      = -O0" >> make.inc &&\
        echo "LOADOPTS   =" >> make.inc &&\
        echo "TIMER      = EXT_ETIME" >> make.inc &&\
        echo "CC         = $(COMPILER_MPICC)" >> make.inc &&\
        echo "CFLAGS     = $(COMPILER_CFLAGS)" >> make.inc &&\
        echo "ARCH       = ar" >> make.inc &&\
        echo "ARCHFLAGS  = cr" >> make.inc &&\
        echo "RANLIB     = ranlib" >> make.inc &&\
        echo "XBLASLIB   =" >> make.inc &&\
        echo "BLASLIB    = ../../librefblas.a" >> make.inc &&\
        echo "LAPACKLIB  = liblapack.a" >> make.inc &&\
        echo "TMGLIB     = libtmglib.a" >> make.inc &&\
        echo "LAPACKELIB = liblapacke.a" >> make.inc &&\
        make -j $(NPROCS) blaslib &&\
        make -j $(NPROCS) lapacklib &&\
        rm -rf $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION) &&\
        mkdir -p $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib &&\
        cp liblapack.a  $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/liblapack.a &&\
        cp librefblas.a $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/libblas.a\
	)


$(MMG3D4_NAME)-$(MMG3D4_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(MMG3D4_FILE) ]; then $(WGET) $(MMG3D4_LOCATION)/$(MMG3D4_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\
	mkdir -p $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(MMG3D4_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\
	export SCOTCH_DIR=$(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\
	export CC=$(COMPILER_MPICC) && \
	export CXX=$(COMPILER_MPICXX) && \
	mkdir build &&\
	cd build &&\
	cmake -DCMAKE_INSTALL_PREFIX=$(INSTALL_DIR)/local/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_VERSION) .. &&\
	make &&\
	make install \
	)

$(PAPI_NAME)-$(PAPI_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/Builds &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(PAPI_FILE) ]; then $(WGET) $(PAPI_LOCATION)/$(PAPI_FILE); fi &&\
	cd $(INSTALL_DIR)/Builds &&\
	rm -rf $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\
	mkdir -p $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(PAPI_FILE) &&\
	cd $(INSTALL_DIR)/Builds/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\
	cd src &&\
	export F77=$(COMPILER_F77) && export CC=$(COMPILER_CC) && ./configure --prefix=$(INSTALL_DIR)/local/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_VERSION) &&\
	make -j $(NPROCS)&&\
	make install \
	)

$(PETSC_NAME)-$(PETSC_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(PETSC_FILE) ]; then $(WGET) $(PETSC_LOCATION)/$(PETSC_FILE); fi &&\
	cd $(INSTALL_DIR)/local &&\
	rm -rf $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) &&\
	mkdir -p $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(PETSC_FILE) &&\
	cd $(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	mv $(PETSC_NAME)-$(PETSC_VERSION) $(PETSC_VERSION) &&\
	cd $(PETSC_VERSION) &&\
	unset PETSC_DIR && ./configure PETSC_ARCH=linux-intel64 --with-mpi-dir=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) --download-hypre --with-blas-lapack-dir=/opt/intel/mkl &&\
	make PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 all \
	)

$(SLEPC_NAME)-$(SLEPC_VERSION):
	(\
	mkdir -p $(INSTALL_DIR)/Downloads &&\
	mkdir -p $(INSTALL_DIR)/local &&\
	cd $(INSTALL_DIR)/Downloads &&\
	if [ ! -f $(SLEPC_FILE) ]; then $(WGET) $(SLEPC_LOCATION)/$(SLEPC_FILE); fi &&\
	cd $(INSTALL_DIR)/local &&\
	rm -rf $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) &&\
	mkdir -p $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	cd $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	tar -xvf $(INSTALL_DIR)/Downloads/$(SLEPC_FILE) &&\
	cd $(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\
	mv $(SLEPC_NAME)-$(SLEPC_VERSION) $(SLEPC_VERSION) &&\
	cd $(SLEPC_VERSION) &&\
	export PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) && export PETSC_ARCH=linux-intel64 && ./configure &&\
	make SLEPC_DIR=$(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 \
	)

.bash_profile / .bashrc: 

#==================#
# SECTION 1: aliases

alias l='ls -l'

# end of SECTION 1
#==================#


#==================#
# SECTION 2: compilers

# crt stuff
export LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH"
export LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH"

# compiler and libraries
source ~/.bashrc_intel
source ~/.bashrc_openmpi
source ~/.bashrc_hdf5
source ~/.bashrc_papi
source ~/.bashrc_petsc
source ~/.bashrc_slepc

# end of SECTION 2
#==================#

#==================#
# SECTION 3: applications

# yales2
source ~/yales2/platforms/xxxx.bash.env

# end of SECTION 3
#==================#


.bashrc_intel: 

# intel-15.0.0
source /opt/intel/composerxe/bin/compilervars.sh intel64
export INTEL_HOME="/opt/intel/composerxe"
export INTEL_INC="$INTEL_HOME/include"
export INTEL_LIB="$INTEL_HOME/lib"
export INTEL_BIN="$INTEL_HOME/bin"
export INTEL_MAN="$INTEL_HOME/man"
export PATH="$INTEL_BIN:$PATH"
export LIBRARY_PATH="$INTEL_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$INTEL_LIB:$LD_LIBRARY_PATH"
export MANPATH="$INTEL_MAN:$MANPATH"


.bashrc_openmpi: 

export MPI_HOME="/local/openmpi/intel-15.0.0/1.10.1"
export MPI_INC="$MPI_HOME/include"
export MPI_LIB="$MPI_HOME/lib"
export MPI_BIN="$MPI_HOME/bin"
export MPI_MAN="$MPI_HOME/share/man"
export PATH="$MPI_BIN:$PATH"
export LIBRARY_PATH="$MPI_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$MPI_LIB:$LD_LIBRARY_PATH"
export MANPATH="$MPI_MAN:$MANPATH"


.bahsrc_hdf5: 

export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.16"
export HDF5_INC="$HDF5_HOME/include"
export HDF5_BIN="$HDF5_HOME/bin"
export HDF5_LIB="$HDF5_HOME/lib"
export PATH="$HDF5_BIN:$PATH"
export LIBRARY_PATH="$HDF5_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$HDF5_LIB:$LD_LIBRARY_PATH"


.bashrc_papi: 

export PAPI_HOME="/local/papi/intel-15.0.0/5.4.1"
export PAPI_INC="$PAPI_HOME/include"
export PAPI_BIN="$PAPI_HOME/bin"
export PAPI_LIB="$PAPI_HOME/lib"
export PATH="$PAPI_BIN:$PATH"
export LIBRARY_PATH="$PAPI_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$PAPI_LIB:$LD_LIBRARY_PATH"


.bashrc_petsc: 

export PETSC_HOME="/local/petsc/intel-15.0.0/3.6.3/"
export PETSC_INC="$PETSC_HOME/linux-intel64/include"
export PETSC_BIN="$PETSC_HOME/linux-intel64/bin"
export PETSC_LIB="$PETSC_HOME/linux-intel64/lib"
export PATH="$PETSC_BIN:$PATH"
export LIBRARY_PATH="$PETSC_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$PETSC_LIB:$LD_LIBRARY_PATH"


.bashrc_slepc: 

export SLEPC_HOME="/local/slepc/intel-15.0.0/3.6.2/"
export SLEPC_INC="$SLEPC_HOME/linux-intel64/include"
export SLEPC_BIN="$SLEPC_HOME/linux-intel64/bin"
export SLEPC_LIB="$SLEPC_HOME/linux-intel64/lib"
export PATH="$SLEPC_BIN:$PATH"
export LIBRARY_PATH="$SLEPC_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$SLEPC_LIB:$LD_LIBRARY_PATH"


For RHEL 7 platforms: 

# Avant le premier boot
# 1/ mettre les 4 disques de 4TB dans les 4 baies du bas
# 2/ mettre le disque SSD de 256GB dans la baie du haut

# Au boot
# 1/ créer le raid matériel
# 2/ boot UEFI sur le SSD
# 3/ Désactiver HyperThreading
# 4/ Désactiver IntelBoost

# finir l’install RHEL
# créer admincoria/root avec un mdp toto (ATTENTION AU CLAVIER AMERICAIN)

# clavier francais au boot
localectl set-locale LANG=en_US.utf8
localectl set-x11-keymap fr
localectl set-keymap fr

# remettre les mdp classiques pour admincoria et root

# modifier le nom de la machine
vi /etc/hostname 

# associer un numéro RHN
subscription-manager register --username=admincoria --password=XXXXXXXX --auto-attach

# créer une table de partition gpt et une partition sur /dev/sda (RAID matériel)
parted /dev/sda
mktable gpt
mkpart primary xfs 64MB 100%

# créer un filesysteme pour /home
mkfs -t xfs /dev/sda1

# deménager l’ancien home et créer le nouveau
umount /home
mount /dev/sda1 /home
mkdir /home2
mount /dev/rhel/home /home2
mv /home2/admincoria /home/admincoria
umount /home2

# modifier /etc/fstab
/dev/sda1               /home                   xfs     defaults        1 2
#==> PENSER A ENLEVER LA LIGNE /dev/rhel/home

# commandes utils pour lvm
lvmdiskscan
vgscan
vgdisplay
lvdisplay

# enlever le volume logique de /home sur le SSD
lvremove /dev/rhel/home

# augmenter la taille de / à 100% de la place dispo
lvextend -l +100%FREE /dev/rhel/root

# augmenter la taille de / jusqu’au maxi dispo
df -k
xfs_info /
xfs_growfs /
df -k

# ajouter le EPEL 7.2
rpm -Uvh http://download.fedoraproject.org/pub/epel/7/x86_64/e/epel-release-7-2.noarch.rpm

# ajouter les bons repos
subscription-manager repos --enable rhel-7-workstation-extras-rpms
subscription-manager repos --enable rhel-7-workstation-optional-rpms
subscription-manager repos --enable rhel-7-workstation-rhn-tools-rpms

# MaJ système
yum update -y

# install
yum install -y x2goserver
yum install -y gparted
yum install -y fail2ban
yum install -y zlib
yum install -y linuxdoc-tools
yum install -y gnuplot
yum install -y paraview
yum install -y lzip
yum install -y xorg-x11-fonts*
yum install -y htop emacs xemacs

# rapatrier clé ssh admincoria puis chmod 700 .ssh

# modifier la config ssh et redémarrer ssh
vi /etc/ssh/sshd_config
RSAAuthentication yes
PubkeyAuthentication yes
#PasswordAuthentication yes
PasswordAuthentication no
KerberosAuthentication no
GSSAPIAuthentication no

systemctl restart sshd.service

# set fail2ban
vi /etc/fail2ban/jail.conf
ignoreip = 127.0.0.1/8 194.254.16.0/24 88.184.97.196
bantime  = 86400
findtime  = 86400
[sshd]
enabled  = true
port    = ssh
logpath = %(sshd_log)s
[sshd-ddos]
enabled  = true
port    = ssh
logpath = %(sshd_log)s

fail2ban-server
fail2ban-client reload
chkconfig fail2ban on

# install intel dans /opt en tant qu'admincoria
rsync azuv amdincoria@luis:/opt/intel /tmp
mv /tmp/intel /opt
chown -R root:root /opt/intel

# créer les .bashrc_* dans /etc/skel 
source .bashrc_intel

# Install librairies (Makefile sur coria-cfd)

# installer grace
wget ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable/grace-5.1.24.tar.gz
./configure --prefix=/local
make -j 8
make install

# créer les utilisateurs

# rapatrier maqao

# VLC & mencoder & ffmpeg
rpm -Uvh http://li.nux.ro/download/nux/dextop/el7/x86_64/nux-dextop-release-0-1.el7.nux.noarch.rpm
yum -y update
yum install -y vlc mencoder ffmpeg


WARNING: If you encounter any problem for installing freeNX, you should consider visiting this website...

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