Difference between revisions of "Installation script for Z800"
From www.coria-cfd.fr
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$(HDF5_NAME)-$(HDF5_VERSION): | $(HDF5_NAME)-$(HDF5_VERSION): | ||
(\ | (\ | ||
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mkdir -p $(INSTALL_DIR)/Downloads &&\ | mkdir -p $(INSTALL_DIR)/Downloads &&\ | ||
mkdir -p $(INSTALL_DIR)/Builds &&\ | mkdir -p $(INSTALL_DIR)/Builds &&\ |
Revision as of 00:19, 18 November 2014
Install Intel Parallel Studio
Makefile_gcc:
INSTALL_DIR = / WGET = wget GCC_VERSION = 4.8.2 NPROCS = 8 all : structure gcc structure: mkdir -p $(INSTALL_DIR)/Downloads mkdir -p $(INSTALL_DIR)/Builds mkdir -p $(INSTALL_DIR)/local gcc: (\ cd $(INSTALL_DIR)/Downloads && \ if [ ! -f gcc-$(GCC_VERSION).tar.bz2 ]; then $(WGET) http://gcc.cybermirror.org/releases/gcc-$(GCC_VERSION)/gcc-$(GCC_VERSION).tar.bz2; fi && \ cd $(INSTALL_DIR)/Builds && \ bunzip2 -c $(INSTALL_DIR)/Downloads/gcc-$(GCC_VERSION).tar.bz2 | tar xv && \ mv gcc-$(GCC_VERSION) gcc-$(GCC_VERSION)_src&& \ cd gcc-$(GCC_VERSION)_src && \ ./contrib/download_prerequisites && \ cd ../ && \ mkdir -p $(INSTALL_DIR)/Builds/gcc-$(GCC_VERSION)_build && \ cd gcc-$(GCC_VERSION)_build && \ ../gcc-$(GCC_VERSION)_src/configure --prefix=/local/gcc-$(GCC_VERSION) && \ make -j $(NPROCS) && \ make check && \ make install \ )
Makefile_packages:
default: sudo add-apt-repository -y ppa:freenx-team sudo apt-get update sudo apt-get upgrade sudo apt-get install -y freenx nvidia-current ubuntu-desktop gnome-session-fallback tcsh ssh g++ gdb gfortran cmake flex bison git gitk subversion rapidsvn vim-gnome lib32z1-dev zlib1g-dev tkcvs default-jre gparted synaptic eclipse paraview browser-plugin-gnash grace gnuplot filezilla dselect emacs xemacs21 meld hdfview vlc autogen autoconf automake cifs-utils valgrind kcachegrind mencoder
Makefile_extlib:
INSTALL_DIR = / WGET = wget NPROCS = 8 SHELL=/bin/bash OPENMPI_NAME = openmpi OPENMPI_VERSION = 1.8.3 OPENMPI_MAJOR_VERSION = 1.8 OPENMPI_LOCATION = http://www.open-mpi.org/software/ompi/v$(OPENMPI_MAJOR_VERSION)/downloads OPENMPI_FILE = $(OPENMPI_NAME)-$(OPENMPI_VERSION).tar.bz2 OPENMPI_CONFIGURE_OPTIONS = --enable-mpi-fortran --enable-static --enable-shared FFTW_NAME = fftw FFTW_VERSION = 3.3.4 FFTW_LOCATION = http://www.fftw.org FFTW_FILE = $(FFTW_NAME)-$(FFTW_VERSION).tar.gz FFTW_CONFIGURE_OPTIONS = HDF5_NAME = hdf5 HDF5_VERSION = 1.8.13 HDF5_LOCATION = http://www.hdfgroup.org/ftp/HDF5/current/src HDF5_FILE = $(HDF5_NAME)-$(HDF5_VERSION).tar.bz2 HDF5_CONFIGURE_OPTIONS = --enable-fortran --enable-cxx PARMETIS_NAME = parmetis PARMETIS_VERSION = 4.0.3 PARMETIS_LOCATION = http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis PARMETIS_FILE = $(PARMETIS_NAME)-$(PARMETIS_VERSION).tar.gz PARMETIS_CONFIGURE_OPTIONS = SCOTCH_NAME = scotch SCOTCH_VERSION = 6.0.3 SCOTCH_LOCATION = https://gforge.inria.fr/frs/download.php/34099 SCOTCH_FILE = $(SCOTCH_NAME)_$(SCOTCH_VERSION).tar.gz SCOTCH_CONFIGURE_OPTIONS = LAPACK_NAME = lapack LAPACK_VERSION = 3.5.0 LAPACK_LOCATION = http://www.netlib.org/lapack LAPACK_FILE = $(LAPACK_NAME)-$(LAPACK_VERSION).tgz LAPACK_CONFIGURE_OPTIONS = MMG3D4_NAME = mmg3d4 MMG3D4_VERSION = 4.0.1 MMG3D4_LOCATION = https://gforge.inria.fr/frs/download.php/file/34048 MMG3D4_FILE = $(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source.tar.gz MMG3D4_CONFIGURE_OPTIONS = PAPI_NAME = papi PAPI_VERSION = 5.3.2 PAPI_LOCATION = http://icl.cs.utk.edu/projects/papi/downloads PAPI_FILE = $(PAPI_NAME)-$(PAPI_VERSION).tar.gz PAPI_CONFIGURE_OPTIONS = PETSC_NAME = petsc PETSC_VERSION = 3.5.2 PETSC_LOCATION = http://ftp.mcs.anl.gov/pub/petsc/release-snapshots PETSC_FILE = $(PETSC_NAME)-$(PETSC_VERSION).tar.gz PETSC_CONFIGURE_OPTIONS = SLEPC_NAME = slepc SLEPC_VERSION = 3.5.2 SLEPC_LOCATION = http://www.grycap.upv.es/slepc/download/distrib SLEPC_FILE = $(SLEPC_NAME)-$(SLEPC_VERSION).tar.gz SLEPC_CONFIGURE_OPTIONS = COMPILER_FAMILY = intel COMPILER_VERSION = 15.0.0 COMPILER_PATH = /opt/intel/composerxe/bin COMPILER_CC = $(COMPILER_PATH)/icc COMPILER_MPICC = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpicc COMPILER_CFLAGS = "-O2 -g" COMPILER_CXX = $(COMPILER_PATH)/icpc COMPILER_MPICXX = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpicxx COMPILER_CXXFLAGS = "-O2 -g" COMPILER_FC = $(COMPILER_PATH)/ifort COMPILER_MPIFC = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpifort COMPILER_FCFLAGS = "-O2 -g" COMPILER_FF = $(COMPILER_PATH)/ifort COMPILER_MPIFF = $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION)/bin/mpifort COMPILER_FFLAGS = "-O2 -g" default: $(OPENMPI_NAME)-$(OPENMPI_VERSION) $(FFTW_NAME)-$(FFTW_VERSION) $(HDF5_NAME)-$(HDF5_VERSION) $(PARMETIS_NAME)-$(PARMETIS_VERSION) $(SCOTCH_NAME)-$(SCOTCH_VERSION) $(LAPACK_NAME)-$(LAPACK_VERSION) $(MMG3D4_NAME)-$(MMG3D4_VERSION) $(PAPI_NAME)-$(PAPI_VERSION) $(PETSC_NAME)-$(PETSC_VERSION) $(SLEPC_NAME)-$(SLEPC_VERSION) $(OPENMPI_NAME)-$(OPENMPI_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(OPENMPI_FILE) ]; then $(WGET) $(OPENMPI_LOCATION)/$(OPENMPI_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\ mkdir -p $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(OPENMPI_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_NAME)-$(OPENMPI_VERSION) &&\ ./configure --prefix=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(OPENMPI_CONFIGURE_OPTIONS)&&\ make -j $(NPROCS) &&\ rm -rf $(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) &&\ make install\ ) $(FFTW_NAME)-$(FFTW_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(FFTW_FILE) ]; then $(WGET) $(FFTW_LOCATION)/$(FFTW_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\ mkdir -p $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(FFTW_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_NAME)-$(FFTW_VERSION) &&\ ./configure --prefix=$(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(FFTW_CONFIGURE_OPTIONS)&&\ make -j $(NPROCS) &&\ rm -rf $(INSTALL_DIR)/local/$(FFTW_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(FFTW_VERSION) &&\ make install\ ) $(HDF5_NAME)-$(HDF5_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(HDF5_FILE) ]; then $(WGET) $(HDF5_LOCATION)/$(HDF5_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\ mkdir -p $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(HDF5_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_NAME)-$(HDF5_VERSION) &&\ ./configure --prefix=$(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) CC=$(COMPILER_CC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_CXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_FC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_FF) FFLAGS=$(COMPILER_FFLAGS) $(HDF5_CONFIGURE_OPTIONS)&&\ make -j $(NPROCS) &&\ rm -rf $(INSTALL_DIR)/local/$(HDF5_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(HDF5_VERSION) &&\ make install\ ) $(PARMETIS_NAME)-$(PARMETIS_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ rm -rf $(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) &&\ rm -rf $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\ mkdir -p $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(PARMETIS_FILE) ]; then $(WGET) $(PARMETIS_LOCATION)/$(PARMETIS_FILE); fi &&\ cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(PARMETIS_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_NAME)-$(PARMETIS_VERSION) &&\ cd metis &&\ sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\ make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\ make &&\ make install &&\ cd .. &&\ sed -i 's/make -C $$(BUILDDIR) $$@ $$(MAKEFLAGS);/$$(MAKE) -C $$(BUILDDIR) $$@;/g' Makefile &&\ sed -i 's/cc = mpicc/cc = not-set/g' Makefile &&\ sed -i 's/cxx = mpicxx/cxx = not-set/g' Makefile &&\ make config prefix=$(INSTALL_DIR)/local/$(PARMETIS_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PARMETIS_VERSION) CC=$(COMPILER_MPICC) CFLAGS=$(COMPILER_CFLAGS) CXX=$(COMPILER_MPICXX) CXXFLAGS=$(COMPILER_CXXFLAGS) FC=$(COMPILER_MPIFC) FCLAGS=$(COMPILER_FCFLAGS) FF=$(COMPILER_MPIFF) FFLAGS=$(COMPILER_FFLAGS) $(PARMETIS_CONFIGURE_OPTIONS) &&\ make &&\ make install \ ) $(SCOTCH_NAME)-$(SCOTCH_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(SCOTCH_FILE) ]; then $(WGET) $(SCOTCH_LOCATION)/$(SCOTCH_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)-$(SCOTCH_VERSION) &&\ mkdir -p $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(SCOTCH_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION) &&\ rm -rf $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\ echo "EXE =" > $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "LIB = .a" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "OBJ = .o" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "MAKE = make" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "AR = ar" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "ARFLAGS = -ruv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CAT = cat" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CCS = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CCP = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CCD = $(COMPILER_MPICC)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CFLAGS = -O3 -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DIDXSIZE64 -I$(COMPILER_PATH)/include" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CLIBFLAGS =" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "LDFLAGS = -lz -lm" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "CP = cp" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "LEX = flex -Pscotchyy -olex.yy.c" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "LN = ln" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "MKDIR = mkdir -p" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "MV = mv" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "RANLIB = ranlib" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "YACC = bison -pscotchyy -y -b y" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ echo "prefix = $(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION)" >> $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src/Makefile.inc &&\ cd $(INSTALL_DIR)/Builds/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_NAME)_$(SCOTCH_VERSION)/src &&\ make -j $(NPROCS) scotch &&\ make -j $(NPROCS) ptscotch &&\ make install\ ) $(LAPACK_NAME)-$(LAPACK_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(LAPACK_FILE) ]; then $(WGET) $(LAPACK_LOCATION)/$(LAPACK_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\ mkdir -p $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(LAPACK_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(LAPACK_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_NAME)-$(LAPACK_VERSION) &&\ rm -f make.inc &&\ touch make.inc &&\ echo "SHELL = /bin/sh" >> make.inc &&\ echo "FORTRAN = $(COMPILER_MPIFC)" >> make.inc &&\ echo "OPTS = $(COMPILER_FCFLAGS)" >> make.inc &&\ echo "LOADER = $(COMPILER_MPIFC)" >> make.inc &&\ echo "DRVOPTS = $(COMPILER_FCFLAGS)" >> make.inc &&\ echo "NOOPT = -O0" >> make.inc &&\ echo "LOADOPTS =" >> make.inc &&\ echo "TIMER = EXT_ETIME" >> make.inc &&\ echo "CC = $(COMPILER_MPICC)" >> make.inc &&\ echo "CFLAGS = $(COMPILER_CFLAGS)" >> make.inc &&\ echo "ARCH = ar" >> make.inc &&\ echo "ARCHFLAGS = cr" >> make.inc &&\ echo "RANLIB = ranlib" >> make.inc &&\ echo "XBLASLIB =" >> make.inc &&\ echo "BLASLIB = ../../librefblas.a" >> make.inc &&\ echo "LAPACKLIB = liblapack.a" >> make.inc &&\ echo "TMGLIB = libtmglib.a" >> make.inc &&\ echo "LAPACKELIB = liblapacke.a" >> make.inc &&\ make -j $(NPROCS) blaslib &&\ make -j $(NPROCS) lapacklib &&\ rm -rf $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION) &&\ mkdir -p $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib &&\ cp liblapack.a $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/liblapack.a &&\ cp librefblas.a $(INSTALL_DIR)/local/lapack/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(LAPACK_VERSION)/lib/libblas.a\ ) $(MMG3D4_NAME)-$(MMG3D4_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(MMG3D4_FILE) ]; then $(WGET) $(MMG3D4_LOCATION)/$(MMG3D4_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\ mkdir -p $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(MMG3D4_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_NAME)-$(MMG3D4_VERSION)-Source &&\ export SCOTCH_DIR=$(INSTALL_DIR)/local/$(SCOTCH_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SCOTCH_VERSION) &&\ export CC=$(COMPILER_MPICC) && \ export CXX=$(COMPILER_MPICXX) && \ mkdir build &&\ cd build &&\ cmake -DCMAKE_INSTALL_PREFIX=$(INSTALL_DIR)/local/$(MMG3D4_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(MMG3D4_VERSION) .. &&\ make &&\ make install \ ) $(PAPI_NAME)-$(PAPI_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/Builds &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(PAPI_FILE) ]; then $(WGET) $(PAPI_LOCATION)/$(PAPI_FILE); fi &&\ cd $(INSTALL_DIR)/Builds &&\ rm -rf $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\ mkdir -p $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(PAPI_FILE) &&\ cd $(INSTALL_DIR)/Builds/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_NAME)-$(PAPI_VERSION) &&\ cd src &&\ export F77=$(COMPILER_F77) && export CC=$(COMPILER_CC) && ./configure --prefix=$(INSTALL_DIR)/local/$(PAPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PAPI_VERSION) &&\ make -j $(NPROCS)&&\ make install \ ) $(PETSC_NAME)-$(PETSC_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(PETSC_FILE) ]; then $(WGET) $(PETSC_LOCATION)/$(PETSC_FILE); fi &&\ cd $(INSTALL_DIR)/local &&\ rm -rf $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) &&\ mkdir -p $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(PETSC_FILE) &&\ cd $(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ mv $(PETSC_NAME)-$(PETSC_VERSION) $(PETSC_VERSION) &&\ cd $(PETSC_VERSION) &&\ unset PETSC_DIR && ./configure PETSC_ARCH=linux-intel64 --with-mpi-dir=$(INSTALL_DIR)/local/$(OPENMPI_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(OPENMPI_VERSION) --download-hypre --with-blas-lapack-dir=/opt/intel/mkl &&\ make PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 all \ ) $(SLEPC_NAME)-$(SLEPC_VERSION): (\ mkdir -p $(INSTALL_DIR)/Downloads &&\ mkdir -p $(INSTALL_DIR)/local &&\ cd $(INSTALL_DIR)/Downloads &&\ if [ ! -f $(SLEPC_FILE) ]; then $(WGET) $(SLEPC_LOCATION)/$(SLEPC_FILE); fi &&\ cd $(INSTALL_DIR)/local &&\ rm -rf $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) &&\ mkdir -p $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ cd $(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ tar -xvf $(INSTALL_DIR)/Downloads/$(SLEPC_FILE) &&\ cd $(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION) &&\ mv $(SLEPC_NAME)-$(SLEPC_VERSION) $(SLEPC_VERSION) &&\ cd $(SLEPC_VERSION) &&\ export PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) && export PETSC_ARCH=linux-intel64 && ./configure &&\ make SLEPC_DIR=$(INSTALL_DIR)/local/$(SLEPC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(SLEPC_VERSION) PETSC_DIR=$(INSTALL_DIR)/local/$(PETSC_NAME)/$(COMPILER_FAMILY)-$(COMPILER_VERSION)/$(PETSC_VERSION) PETSC_ARCH=linux-intel64 \ )
.bash_profile / .bashrc:
#==================# # SECTION 1: aliases alias l='ls -l' # end of SECTION 1 #==================# #==================# # SECTION 2: compilers # crt stuff export LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH" export LIBRARY_PATH="/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH" # compiler and libraries source ~/.bashrc_intel source ~/.bashrc_openmpi source ~/.bashrc_hdf5 source ~/.bashrc_papi source ~/.bashrc_petsc source ~/.bashrc_slepc # end of SECTION 2 #==================# #==================# # SECTION 3: applications # yales2 source ~/yales2/platforms/xxxx.bash.env # end of SECTION 3 #==================#
.bashrc_intel:
# intel-15.0.0 source /opt/intel/composerxe/bin/compilervars.sh intel64 export INTEL_HOME="/opt/intel/composerxe" export INTEL_INC="$INTEL_HOME/include" export INTEL_LIB="$INTEL_HOME/lib" export INTEL_BIN="$INTEL_HOME/bin" export INTEL_MAN="$INTEL_HOME/man" export PATH="$INTEL_BIN:$PATH" export LIBRARY_PATH="$INTEL_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$INTEL_LIB:$LD_LIBRARY_PATH" export MANPATH="$INTEL_MAN:$MANPATH"
.bashrc_openmpi:
export MPI_HOME="/local/openmpi/intel-15.0.0/1.8.3" export MPI_INC="$MPI_HOME/include" export MPI_LIB="$MPI_HOME/lib" export MPI_BIN="$MPI_HOME/bin" export MPI_MAN="$MPI_HOME/share/man" export PATH="$MPI_BIN:$PATH" export LIBRARY_PATH="$MPI_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$MPI_LIB:$LD_LIBRARY_PATH" export MANPATH="$MPI_MAN:$MANPATH"
.bahsrc_hdf5:
export HDF5_HOME="/local/hdf5/intel-15.0.0/1.8.13" export HDF5_INC="$HDF5_HOME/include" export HDF5_BIN="$HDF5_HOME/bin" export HDF5_LIB="$HDF5_HOME/lib" export PATH="$HDF5_BIN:$PATH" export LIBRARY_PATH="$HDF5_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$HDF5_LIB:$LD_LIBRARY_PATH"
.bashrc_papi:
export PAPI_HOME="/local/papi/intel-15.0.0/5.3.2" export PAPI_INC="$PAPI_HOME/include" export PAPI_BIN="$PAPI_HOME/bin" export PAPI_LIB="$PAPI_HOME/lib" export PATH="$PAPI_BIN:$PATH" export LIBRARY_PATH="$PAPI_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$PAPI_LIB:$LD_LIBRARY_PATH"
.bashrc_petsc:
export PETSC_HOME="/local/petsc/intel-15.0.0/3.5.2/" export PETSC_INC="$PETSC_HOME/linux-intel64/include" export PETSC_BIN="$PETSC_HOME/linux-intel64/bin" export PETSC_LIB="$PETSC_HOME/linux-intel64/lib" export PATH="$PETSC_BIN:$PATH" export LIBRARY_PATH="$PETSC_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$PETSC_LIB:$LD_LIBRARY_PATH"
.bashrc_slepc:
export SLEPC_HOME="/local/slepc/intel-15.0.0/3.5.2/" export SLEPC_INC="$SLEPC_HOME/linux-intel64/include" export SLEPC_BIN="$SLEPC_HOME/linux-intel64/bin" export SLEPC_LIB="$SLEPC_HOME/linux-intel64/lib" export PATH="$SLEPC_BIN:$PATH" export LIBRARY_PATH="$SLEPC_LIB:$LIBRARY_PATH" export LD_LIBRARY_PATH="$SLEPC_LIB:$LD_LIBRARY_PATH"
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